Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10779426	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10863583	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10863590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10863594	0.82[ASN][1000 genomes]
rs11118643	0.89[CEU][hapmap]
rs11581606	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026738	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12032422	0.85[ASN][1000 genomes]
rs12125058	0.81[EUR][1000 genomes]
rs1417922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442459	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1442460	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17517959	0.90[ASN][1000 genomes]
rs2039958	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2226092	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4484929	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6541174	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6657013	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6657966	0.92[CEU][hapmap]
rs6686093	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs6693820	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72742546	0.92[ASN][1000 genomes]
rs7527009	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1539138	RRP15	cis	cerebellum	SCAN
rs1539138	LYPLAL1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221343800-221346000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:221344000-221345400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:221344200-221345200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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