Variant report

Variant	rs6657966
Chromosome Location	chr1:221307820-221307821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10746407	0.86[ASN][1000 genomes]
rs10779426	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10863579	0.91[ASN][1000 genomes]
rs10863583	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863590	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11118639	0.91[ASN][1000 genomes]
rs11118640	0.91[ASN][1000 genomes]
rs11118642	0.91[ASN][1000 genomes]
rs11118643	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11118647	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118649	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118651	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11581606	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12026738	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12079507	0.91[ASN][1000 genomes]
rs12125058	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12726290	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1348275	0.91[ASN][1000 genomes]
rs1417922	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1442459	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1442460	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1442464	0.91[ASN][1000 genomes]
rs1539138	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17575156	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2039958	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2226092	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2378436	0.91[ASN][1000 genomes]
rs4484929	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6541174	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6657013	0.82[EUR][1000 genomes]
rs6686093	0.92[CEU][hapmap]
rs6688813	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6693820	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7543241	0.91[ASN][1000 genomes]
rs9662259	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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