Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10779426	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10863583	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10863590	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863594	0.92[ASN][1000 genomes]
rs10863596	0.85[ASN][1000 genomes]
rs11118643	0.89[CEU][hapmap]
rs11581606	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12026738	0.83[EUR][1000 genomes]
rs12032422	0.96[ASN][1000 genomes]
rs1417922	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1442459	0.83[EUR][1000 genomes]
rs1442460	0.83[EUR][1000 genomes]
rs1539138	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17517959	0.96[ASN][1000 genomes]
rs2226092	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4484929	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541174	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6657013	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6657966	0.92[CEU][hapmap]
rs6686093	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs6693820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72742546	0.85[ASN][1000 genomes]
rs7527009	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2039958	LYPLAL1	cis	cerebellum	SCAN
rs2039958	RRP15	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221348600-221356200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:221348600-221356200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:221348800-221353800	Weak transcription	Psoas Muscle	Psoas
4	chr1:221349200-221355200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:221350800-221351400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:221350800-221351800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:221351000-221351200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: