Variant report
| Variant | rs7527009 |
|---|---|
| Chromosome Location | chr1:221384339-221384340 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10779428 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10863590 | 0.91[ASN][1000 genomes] |
| rs10863594 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10863596 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11118670 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11581606 | 0.82[ASN][1000 genomes] |
| rs12032422 | 0.88[ASN][1000 genomes] |
| rs1417922 | 0.81[ASN][1000 genomes] |
| rs1442461 | 0.92[EUR][1000 genomes] |
| rs1473302 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1539138 | 0.81[ASN][1000 genomes] |
| rs17517959 | 0.88[ASN][1000 genomes] |
| rs1891169 | 0.92[EUR][1000 genomes] |
| rs2039958 | 0.91[ASN][1000 genomes] |
| rs2378454 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4846690 | 0.80[EUR][1000 genomes] |
| rs6664199 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7413724 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs751250 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7522767 | 0.80[EUR][1000 genomes] |
| rs9431086 | 0.92[EUR][1000 genomes] |
| rs9431087 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9431466 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv873199 | chr1:221136672-221451217 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221379800-221390200 | Weak transcription | Psoas Muscle | Psoas |
