Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10779428	0.80[EUR][1000 genomes]
rs11118663	0.85[ASN][1000 genomes]
rs11118664	0.84[ASN][1000 genomes]
rs12120171	0.88[ASN][1000 genomes]
rs12122167	0.82[ASN][1000 genomes]
rs12124230	0.89[ASN][1000 genomes]
rs12126632	0.82[ASN][1000 genomes]
rs12127195	0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs12128432	0.85[ASN][1000 genomes]
rs1341619	0.85[ASN][1000 genomes]
rs1442462	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539140	0.85[ASN][1000 genomes]
rs17009652	0.97[ASN][1000 genomes]
rs4846687	0.85[ASN][1000 genomes]
rs4846690	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846692	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4846694	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4846698	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6679997	0.93[ASN][1000 genomes]
rs6686637	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6687985	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs751251	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7527009	0.80[EUR][1000 genomes]
rs7549116	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs874287	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs894362	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9431431	0.88[ASN][1000 genomes]
rs9431445	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9431454	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221390200-221392000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:221390200-221392000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:221390200-221392400	Enhancers	Osteobl	bone
4	chr1:221390400-221392400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:221390600-221392400	Enhancers	NHDF-Ad	bronchial
6	chr1:221391000-221392200	Weak transcription	NHLF	lung
7	chr1:221391200-221392200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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