Variant report
| Variant | rs7549116 |
|---|---|
| Chromosome Location | chr1:221380459-221380460 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10863594 | 0.88[EUR][1000 genomes] |
| rs11118662 | 0.80[ASN][1000 genomes] |
| rs11118663 | 0.84[ASN][1000 genomes] |
| rs11118664 | 0.82[ASN][1000 genomes] |
| rs12120171 | 0.86[ASN][1000 genomes] |
| rs12122167 | 0.86[ASN][1000 genomes] |
| rs12124230 | 0.87[ASN][1000 genomes] |
| rs12126632 | 0.86[ASN][1000 genomes] |
| rs12128432 | 0.89[ASN][1000 genomes] |
| rs1341619 | 0.84[ASN][1000 genomes] |
| rs1442462 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1539140 | 0.84[ASN][1000 genomes] |
| rs17009652 | 0.94[ASN][1000 genomes] |
| rs4846687 | 0.89[ASN][1000 genomes] |
| rs4846690 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4846692 | 0.86[EUR][1000 genomes] |
| rs4846694 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4846698 | 0.86[EUR][1000 genomes] |
| rs6679997 | 0.98[ASN][1000 genomes] |
| rs6686637 | 0.82[ASN][1000 genomes] |
| rs6687985 | 0.85[EUR][1000 genomes] |
| rs751251 | 0.87[EUR][1000 genomes] |
| rs7522767 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7539794 | 0.84[ASN][1000 genomes] |
| rs874287 | 0.85[EUR][1000 genomes] |
| rs894362 | 0.87[EUR][1000 genomes] |
| rs9431431 | 0.86[ASN][1000 genomes] |
| rs9431445 | 0.87[EUR][1000 genomes] |
| rs9431454 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv873199 | chr1:221136672-221451217 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221379800-221390200 | Weak transcription | Psoas Muscle | Psoas |
