Variant report

Variant	rs9431454
Chromosome Location	chr1:221415335-221415336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1442462	0.83[EUR][1000 genomes]
rs4846690	0.92[EUR][1000 genomes]
rs4846692	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4846694	0.96[EUR][1000 genomes]
rs4846698	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6686637	0.92[EUR][1000 genomes]
rs6687985	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs751251	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7522767	0.92[EUR][1000 genomes]
rs7549116	0.84[EUR][1000 genomes]
rs874287	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs894362	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9431445	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221414200-221415600	Enhancers	Colon Smooth Muscle	Colon
2	chr1:221414200-221415600	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:221414200-221416200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:221414400-221415600	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:221415200-221420000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links