Variant report

Variant	rs6686637
Chromosome Location	chr1:221436633-221436634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1442462	0.84[ASN][1000 genomes]
rs17009652	0.87[ASN][1000 genomes]
rs4846690	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4846692	0.88[EUR][1000 genomes]
rs4846694	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846698	0.88[EUR][1000 genomes]
rs6679997	0.84[ASN][1000 genomes]
rs6687985	0.87[EUR][1000 genomes]
rs751251	0.88[EUR][1000 genomes]
rs7522767	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7549116	0.82[ASN][1000 genomes]
rs874287	0.88[EUR][1000 genomes]
rs894362	0.88[EUR][1000 genomes]
rs9431445	0.88[EUR][1000 genomes]
rs9431454	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221435000-221437600	Weak transcription	Fetal Lung	lung
2	chr1:221436400-221437600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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