Variant report

Variant	rs6657215
Chromosome Location	chr1:170065495-170065496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10800496	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10919298	0.82[ASN][1000 genomes]
rs10919299	0.85[ASN][1000 genomes]
rs12078966	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12404242	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12758580	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1360294	0.83[CHB][hapmap]
rs518874	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170064200-170067200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:170064400-170067000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:170064400-170068000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:170064600-170067200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:170064800-170067200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:170065000-170066000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:170065000-170067200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:170065200-170065600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:170065200-170065800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:170065200-170066000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:170065200-170067000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:170065400-170066200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:170065400-170067400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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