Variant report

Variant	rs10919298
Chromosome Location	chr1:170064344-170064345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10800495	0.85[YRI][hapmap]
rs10800496	0.80[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10919284	0.92[YRI][hapmap]
rs10919299	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11803298	0.86[YRI][hapmap]
rs12123693	0.85[YRI][hapmap]
rs12124607	0.86[YRI][hapmap]
rs12126204	0.92[YRI][hapmap]
rs12137754	0.86[YRI][hapmap]
rs1360293	0.92[YRI][hapmap]
rs35688996	0.84[YRI][hapmap]
rs4656737	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4656738	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs518874	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs550297	0.82[CEU][hapmap]
rs580102	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6657215	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6670191	0.93[YRI][hapmap]
rs7521273	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170063800-170064400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr1:170063800-170064400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr1:170063800-170064400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:170063800-170064400	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr1:170064000-170064400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr1:170064000-170064400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr1:170064000-170064400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:170064000-170064400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr1:170064000-170064400	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr1:170064000-170064400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:170064000-170064400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:170064000-170064400	Active TSS	Placenta	Placenta
13	chr1:170064000-170064600	Active TSS	HepG2	liver
14	chr1:170064000-170064600	Active TSS	K562	blood
15	chr1:170064200-170067200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links