Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170063764..170066011-chr1:170067064..170069501,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10800495	0.85[YRI][hapmap]
rs10800496	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10919284	0.92[YRI][hapmap]
rs10919298	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11803298	0.86[YRI][hapmap]
rs12078966	0.86[ASN][1000 genomes]
rs12123693	0.85[YRI][hapmap]
rs12124607	0.86[YRI][hapmap]
rs12126204	0.92[YRI][hapmap]
rs12137754	0.86[YRI][hapmap]
rs1360293	0.92[YRI][hapmap]
rs1360294	0.85[CHB][hapmap]
rs35688996	0.84[YRI][hapmap]
rs4656737	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4656738	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs518874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550297	0.84[CEU][hapmap]
rs575119	0.80[CEU][hapmap]
rs576152	0.80[CEU][hapmap]
rs580102	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6657215	0.81[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6670191	0.93[YRI][hapmap]
rs7521273	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170064400-170068000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:170065400-170067400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:170065600-170068200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:170066200-170067400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:170067000-170067400	Enhancers	NHDF-Ad	bronchial

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