Variant report

Variant	rs6657562
Chromosome Location	chr1:63170767-63170768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1168109	0.91[AFR][1000 genomes]
rs1168110	0.96[AFR][1000 genomes]
rs2182867	0.92[AFR][1000 genomes]
rs4244157	0.92[AFR][1000 genomes]
rs6673434	0.86[AFR][1000 genomes]
rs7544844	0.91[AFR][1000 genomes]
rs943699	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63157600-63173000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:63157600-63180800	Weak transcription	Fetal Brain Male	brain
3	chr1:63160400-63171000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:63163600-63186600	Weak transcription	HepG2	liver
5	chr1:63170400-63171200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:63170400-63171200	ZNF genes & repeats	Fetal Stomach	stomach
7	chr1:63170400-63171400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:63170400-63171400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr1:63170400-63171400	Enhancers	Stomach Mucosa	stomach
10	chr1:63170400-63172000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr1:63170600-63171200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr1:63170600-63171400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:63170600-63172000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:63170600-63173600	Weak transcription	Colonic Mucosa	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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