The 2.0 version of rSNPBase

Variant report

Variant rs943699
Chromosome Location chr1:63157549-63157550
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63154800-63157600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
2 chr1:63154800-63157800 Enhancers Breast Myoepithelial Primary Cells Breast
3 chr1:63154800-63157800 Enhancers Liver Liver
4 chr1:63154800-63157800 Enhancers Colon Smooth Muscle Colon
5 chr1:63154800-63158400 Enhancers Fetal Intestine Large intestine
6 chr1:63155600-63157600 Flanking Active TSS Duodenum Mucosa Duodenum
7 chr1:63155600-63157800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:63155600-63157800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:63155600-63157800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:63155800-63157600 Enhancers HMEC breast
11 chr1:63155800-63158400 Enhancers Stomach Mucosa stomach
12 chr1:63155800-63165000 Weak transcription Primary T cells from cord blood blood
13 chr1:63156200-63158200 Flanking Active TSS HepG2 liver
14 chr1:63156400-63157600 Enhancers Muscle Satellite Cultured Cells --
15 chr1:63156400-63157600 Enhancers Fetal Brain Male brain
16 chr1:63156400-63158000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:63156400-63159400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr1:63156400-63170400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:63156600-63157600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:63156600-63157600 Enhancers Rectal Mucosa Donor 29 rectum
21 chr1:63156600-63158200 Enhancers Cortex derived primary cultured neurospheres brain
22 chr1:63156600-63159800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:63156600-63160000 Weak transcription H1 Cell Line embryonic stem cell
24 chr1:63156600-63170400 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr1:63156800-63157600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:63156800-63157600 Enhancers Rectal Mucosa Donor 31 rectum
27 chr1:63156800-63159800 Weak transcription Fetal Muscle Leg muscle
28 chr1:63156800-63160200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr1:63156800-63160400 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr1:63156800-63160400 Weak transcription Gastric stomach
31 chr1:63156800-63161400 Weak transcription Fetal Brain Female brain
32 chr1:63157000-63158000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:63157000-63159000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:63157000-63159600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:63157000-63160600 Weak transcription Brain Substantia Nigra brain
36 chr1:63157200-63157600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:63157200-63160400 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:63157200-63161000 Weak transcription Fetal Lung lung
39 chr1:63157400-63157600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:63157400-63157600 Enhancers Fetal Kidney kidney
41 chr1:63157400-63157600 Enhancers Sigmoid Colon Sigmoid Colon
42 chr1:63157400-63158200 Enhancers Fetal Intestine Small intestine
43 chr1:63157400-63158800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:63157400-63158800 Weak transcription NHEK skin
45 chr1:63157400-63161200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:63157400-63170400 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015