Variant report

Variant	rs9787152
Chromosome Location	chr1:63179200-63179201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10789122	0.87[AFR][1000 genomes]
rs10889361	0.89[AFR][1000 genomes]
rs10889362	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1168110	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17123784	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887587	0.82[ASN][1000 genomes]
rs2094491	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2149117	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2182867	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244157	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244158	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4542244	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4915623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4915852	0.90[AFR][1000 genomes]
rs6587983	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6673434	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72915162	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74076913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7416564	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514389	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7514753	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7526331	0.85[AFR][1000 genomes]
rs7528933	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7536775	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7538892	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs943699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63157600-63180800	Weak transcription	Fetal Brain Male	brain
2	chr1:63163600-63186600	Weak transcription	HepG2	liver
3	chr1:63171200-63186800	Weak transcription	Fetal Stomach	stomach
4	chr1:63171400-63186400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:63172000-63186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:63172000-63186600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:63174000-63186800	Weak transcription	Fetal Intestine Small	intestine
8	chr1:63177400-63179800	Enhancers	Stomach Mucosa	stomach
9	chr1:63178000-63179600	Enhancers	NHEK	skin
10	chr1:63178200-63179200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:63178200-63179200	Enhancers	HMEC	breast
12	chr1:63178200-63179400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:63178400-63180600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:63178400-63186200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:63178400-63186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:63178400-63186600	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:63178600-63182000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:63178800-63190000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:63179000-63186200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:63179200-63182000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:63179200-63182000	Weak transcription	HMEC	breast

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