Variant report

Variant	rs1887587
Chromosome Location	chr1:63201577-63201578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63201014..63202931-chr1:63208124..63210930,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10889362	0.89[ASN][1000 genomes]
rs1168110	0.82[ASN][1000 genomes]
rs17123784	0.89[ASN][1000 genomes]
rs1927488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2008304	0.89[AMR][1000 genomes]
rs2094491	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149117	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182867	0.82[ASN][1000 genomes]
rs4244157	0.89[ASN][1000 genomes]
rs4244158	0.89[ASN][1000 genomes]
rs4542244	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915623	0.89[ASN][1000 genomes]
rs6587983	0.89[ASN][1000 genomes]
rs6587985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6673434	0.82[ASN][1000 genomes]
rs72915162	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74076913	0.82[ASN][1000 genomes]
rs7416564	0.82[ASN][1000 genomes]
rs7514389	0.89[ASN][1000 genomes]
rs7514753	0.89[ASN][1000 genomes]
rs7528933	0.89[ASN][1000 genomes]
rs7536775	0.89[ASN][1000 genomes]
rs943699	0.82[ASN][1000 genomes]
rs9787152	0.82[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63194600-63202000	Enhancers	HepG2	liver
2	chr1:63198000-63201600	Enhancers	Liver	Liver
3	chr1:63199400-63201800	Enhancers	Fetal Intestine Small	intestine
4	chr1:63199400-63202000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:63199600-63201600	Enhancers	Fetal Intestine Large	intestine
6	chr1:63200200-63201600	Weak transcription	Stomach Mucosa	stomach
7	chr1:63200200-63210600	Weak transcription	Fetal Stomach	stomach
8	chr1:63200200-63212200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:63201000-63201800	Enhancers	Adipose Nuclei	Adipose
10	chr1:63201000-63201800	Enhancers	Fetal Heart	heart
11	chr1:63201000-63202000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:63201000-63202000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:63201000-63202000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:63201000-63202000	Enhancers	NHLF	lung
15	chr1:63201200-63201600	Enhancers	Colon Smooth Muscle	Colon
16	chr1:63201200-63201800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:63201200-63202000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:63201200-63202000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:63201200-63202000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:63201200-63202000	Enhancers	Fetal Muscle Leg	muscle
21	chr1:63201400-63201600	Enhancers	Osteobl	bone
22	chr1:63201400-63201800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:63201400-63202000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:63201400-63202000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:63201400-63202000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:63201400-63202000	Enhancers	A549	lung
27	chr1:63201400-63202200	Enhancers	NHDF-Ad	bronchial

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