Variant report

Variant	rs4542244
Chromosome Location	chr1:63196987-63196988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10889362	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1168110	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168111	0.85[EUR][1000 genomes]
rs17123784	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1887587	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927488	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2008304	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149117	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182867	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4244157	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4244158	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4915623	0.89[ASN][1000 genomes]
rs6587983	0.89[ASN][1000 genomes]
rs6587985	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6673434	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72915162	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74076913	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7416564	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7514389	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7514753	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7528933	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7536775	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs943699	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9787152	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:63193800-63197000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:63194200-63197600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:63194200-63197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:63194600-63202000	Enhancers	HepG2	liver
18	chr1:63195200-63198000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:63195200-63198000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:63195200-63201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:63195400-63197800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:63195600-63199600	Weak transcription	Stomach Mucosa	stomach
23	chr1:63195800-63198000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:63196000-63199600	Weak transcription	Brain Cingulate Gyrus	brain

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