Variant report

Variant	rs6587985
Chromosome Location	chr1:63200349-63200350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10889362	0.86[ASN][1000 genomes]
rs17123784	0.86[ASN][1000 genomes]
rs1887587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2008304	0.89[AMR][1000 genomes]
rs2094491	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149117	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4244157	0.86[ASN][1000 genomes]
rs4244158	0.86[ASN][1000 genomes]
rs4542244	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915623	0.86[ASN][1000 genomes]
rs6587983	0.86[ASN][1000 genomes]
rs72915162	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7514389	0.86[ASN][1000 genomes]
rs7514753	0.86[ASN][1000 genomes]
rs7528933	0.86[ASN][1000 genomes]
rs7536775	0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:63194600-63202000	Enhancers	HepG2	liver
4	chr1:63195200-63201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:63198000-63201600	Enhancers	Liver	Liver
6	chr1:63199000-63201200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:63199400-63201800	Enhancers	Fetal Intestine Small	intestine
8	chr1:63199400-63202000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:63199600-63201600	Enhancers	Fetal Intestine Large	intestine
10	chr1:63200200-63201200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:63200200-63201600	Weak transcription	Stomach Mucosa	stomach
12	chr1:63200200-63210600	Weak transcription	Fetal Stomach	stomach
13	chr1:63200200-63212200	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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