Variant report

Variant	rs2149117
Chromosome Location	chr1:63194591-63194592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10889362	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168110	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1168111	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17123784	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887587	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927488	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2008304	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094491	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182867	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244157	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244158	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542244	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4915623	1.00[ASN][1000 genomes]
rs6587983	1.00[ASN][1000 genomes]
rs6587985	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6673434	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72915162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74076913	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7416564	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7514389	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514753	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528933	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536775	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538892	0.87[ASN][1000 genomes]
rs943699	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787152	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187200-63195200	Weak transcription	Fetal Stomach	stomach
2	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:63190400-63194800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:63191200-63194600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:63191200-63194800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:63191800-63194600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
9	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:63192000-63194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:63192200-63194600	Weak transcription	HepG2	liver
15	chr1:63192200-63194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:63193800-63194800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:63193800-63194800	Weak transcription	Stomach Mucosa	stomach
20	chr1:63193800-63195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:63193800-63197000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:63194000-63195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:63194200-63194600	Weak transcription	Brain Anterior Caudate	brain
29	chr1:63194200-63197600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:63194200-63197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:63194400-63195000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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