Variant report

Variant	rs4244158
Chromosome Location	chr1:63184846-63184847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62903198..62905557-chr1:63182808..63185122,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10789122	0.87[AFR][1000 genomes]
rs10889361	0.91[AFR][1000 genomes]
rs10889362	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168110	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1168111	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12563308	1.00[CEU][hapmap]
rs12565895	1.00[CEU][hapmap]
rs12566265	1.00[CEU][hapmap]
rs17123705	1.00[CEU][hapmap]
rs17123712	1.00[CEU][hapmap]
rs17123721	1.00[CEU][hapmap]
rs17123725	1.00[CEU][hapmap]
rs17123740	1.00[CEU][hapmap]
rs17123743	1.00[CEU][hapmap]
rs17123784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887587	0.89[ASN][1000 genomes]
rs1927488	0.86[ASN][1000 genomes]
rs2094491	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2149117	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182867	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244157	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542244	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4915623	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915852	0.91[AFR][1000 genomes]
rs6587983	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587985	0.86[ASN][1000 genomes]
rs6673434	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72915162	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74076913	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7416564	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7514389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526331	0.87[AFR][1000 genomes]
rs7528933	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538892	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs943699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787152	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63163600-63186600	Weak transcription	HepG2	liver
2	chr1:63171200-63186800	Weak transcription	Fetal Stomach	stomach
3	chr1:63171400-63186400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:63172000-63186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:63172000-63186600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:63174000-63186800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:63178400-63186200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:63178400-63186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:63178400-63186600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:63178800-63190000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:63179000-63186200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:63182000-63186800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:63182400-63186000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:63182400-63186400	Weak transcription	Stomach Mucosa	stomach
15	chr1:63182400-63186600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:63182400-63186600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:63182400-63187200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:63182600-63188000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:63182800-63186200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:63183200-63186600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links