Variant report

Variant	rs7526331
Chromosome Location	chr1:63167856-63167857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10889361	0.83[AFR][1000 genomes]
rs1168111	0.94[AFR][1000 genomes]
rs1168112	0.80[AFR][1000 genomes]
rs4244158	0.87[AFR][1000 genomes]
rs4915623	0.85[AFR][1000 genomes]
rs7416564	0.94[AFR][1000 genomes]
rs7538892	0.83[AFR][1000 genomes]
rs9787152	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63156400-63170400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:63156600-63170400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:63157400-63170400	Weak transcription	Fetal Stomach	stomach
4	chr1:63157600-63173000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:63157600-63180800	Weak transcription	Fetal Brain Male	brain
6	chr1:63158800-63170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:63160400-63171000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:63160600-63170400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:63160600-63170600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:63163600-63186600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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