Variant report

Variant	rs66597987
Chromosome Location	chr14:68963082-68963083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68963025..68965072-chr14:68977283..68978864,2	K562	blood:
2	chr14:68960367..68962165-chr14:68962377..68965286,2	MCF-7	breast:
3	chr14:68958814..68961806-chr14:68963005..68965065,2	K562	blood:
4	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
5	chr14:68960140..68963220-chr14:68983834..68986769,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2525507	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2753403	0.80[EUR][1000 genomes]
rs2842320	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899243	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140827	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727487	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010430	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68944400-68968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68950600-68968200	Weak transcription	Gastric	stomach
3	chr14:68951000-68969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68952000-68967600	Weak transcription	Thymus	Thymus
5	chr14:68955200-68967600	Weak transcription	Placenta	Placenta
6	chr14:68955400-68967600	Weak transcription	Pancreas	Pancrea
7	chr14:68956800-68971800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:68957600-68965600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:68958600-68967800	Weak transcription	Ovary	ovary
10	chr14:68959400-68963400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr14:68959800-68963200	Enhancers	Fetal Muscle Leg	muscle
12	chr14:68960200-68963600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:68960200-68968200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:68960200-68969600	Weak transcription	Fetal Intestine Large	intestine
15	chr14:68960400-68963400	Enhancers	Fetal Lung	lung
16	chr14:68960400-68969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:68960400-68971000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:68960400-68971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:68960400-68971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:68960400-68971800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:68961000-68963400	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:68961000-68963400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr14:68961000-68963400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr14:68961000-68963600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr14:68961000-68963800	Enhancers	Fetal Thymus	thymus
26	chr14:68961200-68963400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:68961200-68963400	Enhancers	HUVEC	blood vessel
28	chr14:68961400-68963200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr14:68961400-68963200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:68961400-68963200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr14:68961600-68963400	Enhancers	Lung	lung
32	chr14:68961800-68963200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:68961800-68963200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:68961800-68965200	Weak transcription	Fetal Heart	heart
35	chr14:68962000-68972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:68962200-68963200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:68962200-68965800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:68962200-68969400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:68962200-68971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:68962400-68963200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:68962400-68963200	Enhancers	Primary T cells from cord blood	blood
42	chr14:68962400-68963400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:68962400-68963400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr14:68962400-68967600	Weak transcription	Adipose Nuclei	Adipose
45	chr14:68962400-68967800	Weak transcription	Esophagus	oesophagus
46	chr14:68962600-68963600	Enhancers	GM12878-XiMat	blood
47	chr14:68962800-68967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:68962800-68968000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:68962800-68968600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:68962800-68972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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