Variant report

Variant	rs7140827
Chromosome Location	chr14:68955809-68955810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68954869..68956899-chr14:68959917..68962601,2	K562	blood:
2	chr14:68949014..68951407-chr14:68955000..68958797,3	MCF-7	breast:
3	chr14:68953391..68956250-chr14:68958714..68961472,3	MCF-7	breast:
4	chr14:68953516..68956105-chr14:69031281..69032834,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2525507	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2753403	0.82[EUR][1000 genomes]
rs2842320	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66597987	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727487	1.00[ASN][1000 genomes]
rs8010430	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68943800-68957400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:68944000-68959200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:68944200-68957400	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:68944400-68968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:68944600-68957400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:68945400-68959600	Weak transcription	Primary B cells from cord blood	blood
7	chr14:68950600-68968200	Weak transcription	Gastric	stomach
8	chr14:68950800-68959200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:68951000-68957400	Weak transcription	Fetal Stomach	stomach
10	chr14:68951000-68957400	Weak transcription	Spleen	Spleen
11	chr14:68951000-68959400	Weak transcription	Fetal Kidney	kidney
12	chr14:68951000-68969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:68951800-68960400	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:68952000-68958600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:68952000-68961800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:68952000-68967600	Weak transcription	Thymus	Thymus
17	chr14:68952400-68960600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:68953200-68960400	Weak transcription	Fetal Lung	lung
19	chr14:68953400-68960200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:68953600-68956800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:68954000-68957400	Weak transcription	Fetal Intestine Large	intestine
22	chr14:68954000-68957400	Weak transcription	Fetal Intestine Small	intestine
23	chr14:68954000-68961600	Weak transcription	Lung	lung
24	chr14:68954600-68956400	Enhancers	GM12878-XiMat	blood
25	chr14:68954600-68958000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr14:68955000-68961000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr14:68955200-68961000	Weak transcription	Fetal Thymus	thymus
28	chr14:68955200-68961200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:68955200-68961800	Weak transcription	HSMM	muscle
30	chr14:68955200-68967600	Weak transcription	Placenta	Placenta
31	chr14:68955400-68957400	Weak transcription	K562	blood
32	chr14:68955400-68959400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:68955400-68961200	Weak transcription	NHEK	skin
34	chr14:68955400-68961400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:68955400-68967600	Weak transcription	Pancreas	Pancrea
36	chr14:68955600-68956200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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