Variant report

Variant	rs72727487
Chromosome Location	chr14:68967103-68967104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68960497..68962145-chr14:68965720..68967395,2	MCF-7	breast:
2	chr14:68963816..68966156-chr14:68966980..68968519,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2525507	0.92[ASN][1000 genomes]
rs2842320	0.92[ASN][1000 genomes]
rs4899243	1.00[ASN][1000 genomes]
rs66597987	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140827	1.00[ASN][1000 genomes]
rs8010430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68944400-68968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68950600-68968200	Weak transcription	Gastric	stomach
3	chr14:68951000-68969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68952000-68967600	Weak transcription	Thymus	Thymus
5	chr14:68955200-68967600	Weak transcription	Placenta	Placenta
6	chr14:68955400-68967600	Weak transcription	Pancreas	Pancrea
7	chr14:68956800-68971800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:68958600-68967800	Weak transcription	Ovary	ovary
9	chr14:68960200-68968200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:68960200-68969600	Weak transcription	Fetal Intestine Large	intestine
11	chr14:68960400-68969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:68960400-68971000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:68960400-68971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:68960400-68971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:68960400-68971800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:68962000-68972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:68962200-68969400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:68962200-68971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:68962400-68967600	Weak transcription	Adipose Nuclei	Adipose
20	chr14:68962400-68967800	Weak transcription	Esophagus	oesophagus
21	chr14:68962800-68967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:68962800-68968000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:68962800-68968600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:68962800-68972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:68963000-68967800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:68963000-68968200	Weak transcription	Primary B cells from cord blood	blood
27	chr14:68963200-68967400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:68963200-68967400	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:68963200-68967600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:68963200-68972600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:68963400-68967400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:68963400-68967400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:68963400-68967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:68963400-68967600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:68963400-68967600	Weak transcription	Lung	lung
36	chr14:68963400-68968000	Weak transcription	Fetal Lung	lung
37	chr14:68963600-68967400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:68963600-68967600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:68965000-68971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:68965400-68974400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
42	chr14:68965800-68967800	Weak transcription	Fetal Heart	heart
43	chr14:68965800-68973200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr14:68966000-68967600	Weak transcription	Primary T cells from cord blood	blood
45	chr14:68966000-68967800	Weak transcription	Fetal Stomach	stomach
46	chr14:68966000-68970400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:68966200-68968200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:68966200-68968200	Weak transcription	Small Intestine	intestine
49	chr14:68966400-68968600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:68966400-68970000	Enhancers	Spleen	Spleen

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