Variant report

Variant	rs6661582
Chromosome Location	chr1:84231893-84231894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11163843	0.93[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070852	1.00[EUR][1000 genomes]
rs12074456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094749	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57112933	1.00[EUR][1000 genomes]
rs61243881	1.00[EUR][1000 genomes]
rs7534874	1.00[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84227800-84234600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:84228400-84235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84230000-84232000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:84230000-84232200	Enhancers	HepG2	liver
5	chr1:84230400-84232000	Weak transcription	Fetal Lung	lung
6	chr1:84230400-84233600	Weak transcription	Fetal Kidney	kidney
7	chr1:84230400-84234800	Weak transcription	Fetal Brain Male	brain
8	chr1:84230400-84235000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:84230600-84234200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:84230600-84235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:84231200-84235400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:84231400-84234800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:84231400-84235600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:84231600-84232000	Enhancers	Liver	Liver
15	chr1:84231800-84232200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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