Variant report

Variant	rs12070852
Chromosome Location	chr1:84258071-84258072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11163843	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12074456	1.00[EUR][1000 genomes]
rs12079095	1.00[EUR][1000 genomes]
rs12094749	1.00[EUR][1000 genomes]
rs57112933	1.00[EUR][1000 genomes]
rs61243881	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6661582	1.00[EUR][1000 genomes]
rs7524666	1.00[EUR][1000 genomes]
rs7524960	1.00[EUR][1000 genomes]
rs7533541	1.00[EUR][1000 genomes]
rs7534874	1.00[EUR][1000 genomes]
rs7538094	1.00[EUR][1000 genomes]
rs7540972	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947189	chr1:84257762-84263159	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84255400-84264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:84257000-84261600	Weak transcription	Primary T cells from cord blood	blood
3	chr1:84257200-84258200	Enhancers	NHDF-Ad	bronchial
4	chr1:84257200-84258400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:84257200-84258400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:84257400-84258400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:84258000-84265000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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