Variant report

Variant	rs66726712
Chromosome Location	chr17:50886320-50886321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA10-2	chr17:50886286-50886458	l_1468_chr17:50881709-50890896_testes

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11868113	0.84[ASN][1000 genomes]
rs11869458	0.84[ASN][1000 genomes]
rs11871662	0.86[ASN][1000 genomes]
rs12709475	0.86[ASN][1000 genomes]
rs13380857	0.86[ASN][1000 genomes]
rs16952060	0.84[ASN][1000 genomes]
rs16952070	0.84[ASN][1000 genomes]
rs16952221	0.96[ASN][1000 genomes]
rs16952328	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17626230	0.88[ASN][1000 genomes]
rs17704586	0.86[ASN][1000 genomes]
rs2331502	0.86[ASN][1000 genomes]
rs28414121	0.84[ASN][1000 genomes]
rs28441274	0.88[ASN][1000 genomes]
rs2877393	0.84[ASN][1000 genomes]
rs2877395	0.86[ASN][1000 genomes]
rs2877396	0.86[ASN][1000 genomes]
rs28830501	0.86[ASN][1000 genomes]
rs4130669	0.88[ASN][1000 genomes]
rs4258667	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4268805	0.90[ASN][1000 genomes]
rs4271636	0.81[ASN][1000 genomes]
rs4451995	0.88[ASN][1000 genomes]
rs5020101	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58786854	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59844681	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60252679	0.84[ASN][1000 genomes]
rs60291883	0.84[ASN][1000 genomes]
rs6504792	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6504793	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67487026	0.86[ASN][1000 genomes]
rs67871614	0.86[ASN][1000 genomes]
rs68079036	0.86[ASN][1000 genomes]
rs7210826	0.88[ASN][1000 genomes]
rs7211428	0.82[ASN][1000 genomes]
rs7213025	0.88[ASN][1000 genomes]
rs7217213	0.88[ASN][1000 genomes]
rs7223983	0.88[ASN][1000 genomes]
rs7224146	0.83[ASN][1000 genomes]
rs7359589	0.84[ASN][1000 genomes]
rs8066777	0.86[ASN][1000 genomes]
rs8067043	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8073239	0.95[ASN][1000 genomes]
rs8077546	0.94[ASN][1000 genomes]
rs8078281	0.93[ASN][1000 genomes]
rs8080294	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8080374	0.86[ASN][1000 genomes]
rs8080442	0.86[ASN][1000 genomes]
rs8080461	0.84[ASN][1000 genomes]
rs8082080	0.86[ASN][1000 genomes]
rs9303605	0.88[ASN][1000 genomes]
rs9747485	0.88[ASN][1000 genomes]
rs9807080	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9892154	0.86[ASN][1000 genomes]
rs9893696	0.88[ASN][1000 genomes]
rs9896598	0.86[ASN][1000 genomes]
rs9897750	0.86[ASN][1000 genomes]
rs9898380	0.88[ASN][1000 genomes]
rs9901482	0.88[ASN][1000 genomes]
rs9903132	0.88[ASN][1000 genomes]
rs9908153	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528447	chr17:50323521-51118173	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058871	chr17:50636576-51084535	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv543388	chr17:50636576-51084535	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv908614	chr17:50644300-50888949	Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1058064	chr17:50650659-51069119	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv543389	chr17:50650659-51069119	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv908615	chr17:50663355-50930169	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv575557	chr17:50816035-50944581	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50886000-50886400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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