Variant report
| Variant | rs8078281 |
|---|---|
| Chromosome Location | chr17:50936108-50936109 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000226364 | TF binding region |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs16952221 | 0.92[ASN][1000 genomes] |
| rs16952328 | 0.93[ASN][1000 genomes] |
| rs17626230 | 0.81[ASN][1000 genomes] |
| rs28441274 | 0.81[ASN][1000 genomes] |
| rs4130669 | 0.81[ASN][1000 genomes] |
| rs4258667 | 0.96[ASN][1000 genomes] |
| rs4268805 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4451995 | 0.81[ASN][1000 genomes] |
| rs5020101 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58786854 | 0.83[ASN][1000 genomes] |
| rs59844681 | 0.96[ASN][1000 genomes] |
| rs6504792 | 0.96[ASN][1000 genomes] |
| rs6504793 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs66726712 | 0.93[ASN][1000 genomes] |
| rs7210826 | 0.81[ASN][1000 genomes] |
| rs7213025 | 0.81[ASN][1000 genomes] |
| rs7217213 | 0.81[ASN][1000 genomes] |
| rs7223983 | 0.81[ASN][1000 genomes] |
| rs8067043 | 0.81[ASN][1000 genomes] |
| rs8073239 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8077546 | 0.99[ASN][1000 genomes] |
| rs8080294 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9303605 | 0.81[ASN][1000 genomes] |
| rs9747485 | 0.81[ASN][1000 genomes] |
| rs9807080 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9893696 | 0.81[ASN][1000 genomes] |
| rs9898380 | 0.81[ASN][1000 genomes] |
| rs9901482 | 0.81[ASN][1000 genomes] |
| rs9903132 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv528447 | chr17:50323521-51118173 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058871 | chr17:50636576-51084535 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv543388 | chr17:50636576-51084535 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1058064 | chr17:50650659-51069119 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv543389 | chr17:50650659-51069119 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv575557 | chr17:50816035-50944581 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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