The 2.0 version of rSNPBase

Variant report

Variant rs6676546
Chromosome Location chr1:63187054-63187055
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63178800-63190000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:63182400-63187200 Weak transcription Primary monocytes fromperipheralblood blood
3 chr1:63182600-63188000 Weak transcription Monocytes-CD14+_RO01746 blood
4 chr1:63186000-63188000 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr1:63186200-63187400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:63186200-63187600 Enhancers Cortex derived primary cultured neurospheres brain
7 chr1:63186200-63187600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:63186200-63188800 Enhancers Rectal Mucosa Donor 31 rectum
9 chr1:63186400-63187200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr1:63186400-63187200 Enhancers HUES64 Cell Line embryonic stem cell
11 chr1:63186400-63187200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:63186400-63187200 Enhancers Fetal Heart heart
13 chr1:63186400-63187400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:63186400-63187400 Enhancers Duodenum Mucosa Duodenum
15 chr1:63186400-63187400 Enhancers Stomach Mucosa stomach
16 chr1:63186400-63187400 Enhancers HUVEC blood vessel
17 chr1:63186400-63187600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:63186600-63187200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:63186600-63187200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:63186600-63187200 Enhancers Fetal Lung lung
21 chr1:63186600-63187200 Enhancers K562 blood
22 chr1:63186600-63187200 Enhancers Osteobl bone
23 chr1:63186600-63187400 Enhancers iPS-18 Cell Line embryonic stem cell
24 chr1:63186600-63187400 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr1:63186600-63187400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:63186600-63187400 Enhancers Adipose Nuclei Adipose
27 chr1:63186600-63187400 Enhancers Fetal Muscle Leg muscle
28 chr1:63186600-63187400 Enhancers Left Ventricle heart
29 chr1:63186600-63187400 Enhancers Spleen Spleen
30 chr1:63186600-63187600 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:63186600-63187600 Enhancers HepG2 liver
32 chr1:63186600-63188200 Enhancers Fetal Intestine Large intestine
33 chr1:63186800-63187200 Enhancers Fetal Stomach stomach
34 chr1:63186800-63187400 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr1:63186800-63187400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:63186800-63187400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:63186800-63187400 Enhancers Fetal Intestine Small intestine
38 chr1:63186800-63188000 Enhancers Small Intestine intestine
39 chr1:63187000-63187200 Enhancers Brain Anterior Caudate brain
40 chr1:63187000-63187200 Enhancers NH-A brain
41 chr1:63187000-63187400 Enhancers Duodenum Smooth Muscle Duodenum
42 chr1:63187000-63187400 Flanking Active TSS Rectal Mucosa Donor 29 rectum
43 chr1:63187000-63189200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:63187000-63189800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:63187000-63189800 Weak transcription Brain Cingulate Gyrus brain
46 chr1:63187000-63190200 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:63187000-63191000 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015