The 2.0 version of rSNPBase

Variant report

Variant rs6679796
Chromosome Location chr1:212402524-212402525
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212392600-212404800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:212398800-212402600 Enhancers Stomach Mucosa stomach
3 chr1:212399000-212403200 Enhancers Fetal Heart heart
4 chr1:212399400-212405200 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr1:212399600-212403200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr1:212399600-212404000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:212399600-212404800 Weak transcription Fetal Muscle Leg muscle
8 chr1:212399800-212403200 Weak transcription Right Ventricle heart
9 chr1:212399800-212403800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:212399800-212405200 Weak transcription Primary monocytes fromperipheralblood blood
11 chr1:212399800-212406600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:212399800-212407800 Weak transcription Brain Anterior Caudate brain
13 chr1:212400000-212404800 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr1:212400000-212405000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:212400000-212405200 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr1:212400000-212405200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:212400000-212405200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:212400000-212405200 Weak transcription Fetal Thymus thymus
19 chr1:212400000-212407600 Weak transcription Spleen Spleen
20 chr1:212400000-212407800 Weak transcription Right Atrium heart
21 chr1:212400000-212407800 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:212400200-212405400 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:212400200-212406800 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr1:212400600-212404200 Enhancers Pancreas Pancrea
25 chr1:212400800-212402800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:212401000-212402600 Enhancers NHDF-Ad bronchial
27 chr1:212401200-212403000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:212401200-212404200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:212401400-212403200 Weak transcription Small Intestine intestine
30 chr1:212401400-212408400 Weak transcription Lung lung
31 chr1:212401600-212402600 Enhancers Fetal Kidney kidney
32 chr1:212401600-212402800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
33 chr1:212401600-212403400 Enhancers Fetal Intestine Large intestine
34 chr1:212401600-212403400 Enhancers Fetal Intestine Small intestine
35 chr1:212401600-212405000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:212401800-212409000 Weak transcription Gastric stomach
37 chr1:212402400-212402600 Flanking Active TSS Liver Liver
38 chr1:212402400-212402800 Enhancers A549 lung
39 chr1:212402400-212403800 Enhancers HepG2 liver
40 chr1:212402400-212404800 Weak transcription Left Ventricle heart
41 chr1:212402400-212407800 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015