Variant report

Variant	rs6680470
Chromosome Location	chr1:213120118-213120119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17020046	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs58826561	0.97[EUR][1000 genomes]
rs59252582	0.92[EUR][1000 genomes]
rs6656706	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656738	0.90[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6667192	1.00[CEU][hapmap];0.89[TSI][hapmap];0.97[EUR][1000 genomes]
rs6674283	0.97[EUR][1000 genomes]
rs903802	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv524488	chr1:213120103-213120118	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213116000-213121200	Enhancers	GM12878-XiMat	blood
2	chr1:213116400-213123400	Weak transcription	Right Atrium	heart
3	chr1:213118800-213120800	Enhancers	Primary B cells from cord blood	blood
4	chr1:213119400-213120200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:213119400-213120200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:213119600-213120200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:213119600-213120400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:213119600-213120400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:213119600-213121200	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:213119800-213120200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:213119800-213120200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:213120000-213120400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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