Variant report

Variant	rs903802
Chromosome Location	chr1:213115521-213115522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10127459	0.82[EUR][1000 genomes]
rs17020046	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17020048	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs58826561	0.92[EUR][1000 genomes]
rs59252582	0.97[EUR][1000 genomes]
rs6656706	0.81[CEU][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6656738	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6667192	0.90[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs6674283	0.92[EUR][1000 genomes]
rs6680470	0.90[CEU][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73084226	0.96[ASN][1000 genomes]
rs949932	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9662838	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213102800-213116000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:213107800-213119400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:213111200-213115600	Weak transcription	HepG2	liver
4	chr1:213112400-213116000	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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