Variant report

Variant	rs6681199
Chromosome Location	chr1:84886680-84886681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1246384	0.83[AMR][1000 genomes]
rs1246385	0.83[AMR][1000 genomes]
rs1911158	0.83[AMR][1000 genomes]
rs2892837	0.83[AMR][1000 genomes]
rs2911601	0.83[AMR][1000 genomes]
rs2943661	0.83[AMR][1000 genomes]
rs2945139	0.83[AMR][1000 genomes]
rs2945144	0.83[AMR][1000 genomes]
rs2994936	0.83[AMR][1000 genomes]
rs2994951	0.83[AMR][1000 genomes]
rs2994956	0.83[AMR][1000 genomes]
rs3116423	0.83[AMR][1000 genomes]
rs312399	0.83[AMR][1000 genomes]
rs4907071	0.83[AMR][1000 genomes]
rs6576703	1.00[AMR][1000 genomes]
rs937841	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9432822	0.83[AMR][1000 genomes]
rs9432823	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84881600-84893000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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