Variant report

Variant	rs9432822
Chromosome Location	chr1:84901057-84901058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1246157	0.83[AMR][1000 genomes]
rs1246384	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1246385	1.00[AMR][1000 genomes]
rs1911158	1.00[AMR][1000 genomes]
rs2892837	1.00[AMR][1000 genomes]
rs2911601	1.00[AMR][1000 genomes]
rs2943661	1.00[AMR][1000 genomes]
rs2945139	1.00[AMR][1000 genomes]
rs2945144	1.00[AMR][1000 genomes]
rs2994936	1.00[AMR][1000 genomes]
rs2994951	1.00[AMR][1000 genomes]
rs2994956	1.00[AMR][1000 genomes]
rs3116423	1.00[AMR][1000 genomes]
rs312399	1.00[AMR][1000 genomes]
rs4907069	0.83[AMR][1000 genomes]
rs4907071	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6576703	0.83[AMR][1000 genomes]
rs6669435	0.83[AMR][1000 genomes]
rs6681199	0.83[AMR][1000 genomes]
rs937841	1.00[AMR][1000 genomes]
rs9432823	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9433226	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84893400-84902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:84898400-84903000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84899200-84901200	Enhancers	NHEK	skin
4	chr1:84899600-84901200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:84899600-84901600	Enhancers	GM12878-XiMat	blood
6	chr1:84899600-84901800	Weak transcription	Fetal Brain Male	brain
7	chr1:84899600-84901800	Enhancers	Thymus	Thymus
8	chr1:84899600-84902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:84899600-84902400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:84899600-84902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:84899600-84902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:84899600-84902400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:84899600-84902600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:84899600-84902600	Weak transcription	Adipose Nuclei	Adipose
15	chr1:84899600-84902800	Weak transcription	Fetal Thymus	thymus
16	chr1:84899600-84903000	Weak transcription	Brain Angular Gyrus	brain
17	chr1:84899600-84903200	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
20	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:84899800-84901200	Weak transcription	Brain Anterior Caudate	brain
22	chr1:84899800-84901200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:84899800-84901400	Enhancers	Dnd41	blood
24	chr1:84899800-84901600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:84900000-84902600	Weak transcription	Brain Substantia Nigra	brain
27	chr1:84900000-84902800	Weak transcription	Fetal Brain Female	brain
28	chr1:84900000-84903000	Weak transcription	Aorta	Aorta
29	chr1:84900400-84901200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:84900400-84901600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr1:84900400-84901800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr1:84900400-84901800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:84900400-84901800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr1:84900600-84901400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:84900600-84901400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:84900600-84901400	Enhancers	Liver	Liver
37	chr1:84900600-84901600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr1:84900600-84901600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:84900600-84901600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr1:84900600-84901800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr1:84900600-84903000	Enhancers	Primary B cells from cord blood	blood
42	chr1:84900800-84901200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:84900800-84901200	Active TSS	Primary T cells fromperipheralblood	blood
44	chr1:84900800-84901200	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr1:84900800-84901200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:84900800-84901200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:84900800-84901200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr1:84900800-84901200	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr1:84900800-84901200	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr1:84900800-84901200	Flanking Active TSS	NHDF-Ad	bronchial

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