Variant report

Variant	rs9433226
Chromosome Location	chr1:84902757-84902758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84902465..84904153-chr1:84904370..84905923,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1246384	0.83[AMR][1000 genomes]
rs1246385	0.83[AMR][1000 genomes]
rs1911158	0.83[AMR][1000 genomes]
rs2892837	0.83[AMR][1000 genomes]
rs2911601	0.83[AMR][1000 genomes]
rs2943661	0.83[AMR][1000 genomes]
rs2945139	0.83[AMR][1000 genomes]
rs2945144	0.83[AMR][1000 genomes]
rs2994936	0.83[AMR][1000 genomes]
rs2994951	0.83[AMR][1000 genomes]
rs2994956	0.83[AMR][1000 genomes]
rs3116423	0.83[AMR][1000 genomes]
rs312399	0.83[AMR][1000 genomes]
rs4907069	0.85[AFR][1000 genomes]
rs4907071	0.83[AMR][1000 genomes]
rs6669435	0.82[AFR][1000 genomes]
rs937841	0.83[AMR][1000 genomes]
rs9432822	0.83[AMR][1000 genomes]
rs9432823	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84898400-84903000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:84899600-84902800	Weak transcription	Fetal Thymus	thymus
3	chr1:84899600-84903000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:84899600-84903200	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
7	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:84900000-84902800	Weak transcription	Fetal Brain Female	brain
10	chr1:84900000-84903000	Weak transcription	Aorta	Aorta
11	chr1:84900600-84903000	Enhancers	Primary B cells from cord blood	blood
12	chr1:84901200-84902800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:84901200-84903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:84901200-84903000	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:84901200-84903800	Enhancers	Brain Anterior Caudate	brain
16	chr1:84901200-84908800	Weak transcription	NHLF	lung
17	chr1:84901400-84903000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:84901400-84903200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr1:84901400-84903200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:84901400-84904000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr1:84901400-84907400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:84901400-84907600	Weak transcription	Dnd41	blood
23	chr1:84901600-84902800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:84901600-84902800	Weak transcription	GM12878-XiMat	blood
25	chr1:84901600-84903000	Enhancers	Primary T cells from cord blood	blood
26	chr1:84901600-84903800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr1:84901600-84908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr1:84901800-84902800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:84901800-84902800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr1:84901800-84902800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr1:84901800-84902800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr1:84901800-84902800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr1:84901800-84903000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr1:84901800-84903600	Enhancers	Fetal Brain Male	brain
35	chr1:84902000-84902800	Enhancers	Brain Hippocampus Middle	brain
36	chr1:84902000-84903000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:84902000-84903400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr1:84902000-84908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:84902200-84903000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr1:84902200-84903000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr1:84902200-84903600	Enhancers	Brain Cingulate Gyrus	brain
42	chr1:84902400-84903000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr1:84902400-84903200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:84902400-84903400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:84902400-84903400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr1:84902400-84903800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:84902400-84903800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:84902600-84902800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr1:84902600-84903000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr1:84902600-84903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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