Variant report
| Variant | rs66815650 |
|---|---|
| Chromosome Location | chr3:24679948-24679949 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000228791 | Chromatin interaction |
| ENSG00000151090 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12635920 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12639068 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17014996 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6550880 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6550881 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72619931 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72619932 | 0.99[ASN][1000 genomes] |
| rs73143135 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7610415 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7631804 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7645619 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7651543 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757862 | chr3:24652513-24942926 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2759135 | chr3:24652513-24942926 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
