Variant report

Variant	rs72619932
Chromosome Location	chr3:24680822-24680823
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10440099	0.88[EUR][1000 genomes]
rs10440132	0.87[EUR][1000 genomes]
rs10440133	0.87[EUR][1000 genomes]
rs12633792	0.89[EUR][1000 genomes]
rs12635920	0.85[ASN][1000 genomes]
rs13320164	0.89[EUR][1000 genomes]
rs17014911	0.86[EUR][1000 genomes]
rs2362119	0.89[EUR][1000 genomes]
rs28717685	0.89[EUR][1000 genomes]
rs55707778	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60800624	0.82[EUR][1000 genomes]
rs6550880	0.87[ASN][1000 genomes]
rs6550881	0.88[ASN][1000 genomes]
rs66815650	0.99[ASN][1000 genomes]
rs72619928	0.83[EUR][1000 genomes]
rs72619929	0.85[EUR][1000 genomes]
rs72619931	0.88[ASN][1000 genomes]
rs7651543	1.00[ASN][1000 genomes]
rs9310747	0.87[EUR][1000 genomes]
rs9822090	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24680000-24681800	Enhancers	Fetal Intestine Large	intestine
2	chr3:24680400-24681800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:24680400-24683400	Enhancers	Adipose Nuclei	Adipose
4	chr3:24680400-24683600	Enhancers	Fetal Intestine Small	intestine
5	chr3:24680600-24681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:24680800-24681000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24680800-24681800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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