Variant report

Variant	rs7651543
Chromosome Location	chr3:24681219-24681220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12635920	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639068	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17014996	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6550880	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6550881	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66815650	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72619931	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72619932	1.00[ASN][1000 genomes]
rs73143135	0.86[AMR][1000 genomes]
rs7631804	0.80[AMR][1000 genomes]
rs7645619	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24680000-24681800	Enhancers	Fetal Intestine Large	intestine
2	chr3:24680400-24681800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:24680400-24683400	Enhancers	Adipose Nuclei	Adipose
4	chr3:24680400-24683600	Enhancers	Fetal Intestine Small	intestine
5	chr3:24680600-24681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:24680800-24681800	Enhancers	Stomach Mucosa	stomach
7	chr3:24681000-24681400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:24681000-24681800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:24681000-24682400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:24681000-24683600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:24681000-24683800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:24681200-24681400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:24681200-24681400	Enhancers	Fetal Muscle Leg	muscle
14	chr3:24681200-24681800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:24681200-24681800	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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