Variant report
| Variant | rs66868318 |
|---|---|
| Chromosome Location | chr5:36826221-36826222 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:36825884..36828546-chr5:36876173..36877815,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164190 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12656269 | 0.87[EUR][1000 genomes] |
| rs12659960 | 0.87[EUR][1000 genomes] |
| rs12659981 | 0.87[EUR][1000 genomes] |
| rs12659983 | 0.87[EUR][1000 genomes] |
| rs151945 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs151947 | 0.95[EUR][1000 genomes] |
| rs158410 | 0.84[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs158792 | 0.87[EUR][1000 genomes] |
| rs158795 | 0.83[ASN][1000 genomes] |
| rs158797 | 0.84[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs158798 | 0.91[EUR][1000 genomes] |
| rs158799 | 0.91[EUR][1000 genomes] |
| rs159140 | 0.86[EUR][1000 genomes] |
| rs159141 | 0.86[EUR][1000 genomes] |
| rs167146 | 0.86[EUR][1000 genomes] |
| rs181755 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2133786 | 0.95[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs245587 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs292160 | 0.84[EUR][1000 genomes] |
| rs292181 | 0.83[EUR][1000 genomes] |
| rs292186 | 0.83[EUR][1000 genomes] |
| rs292196 | 0.86[EUR][1000 genomes] |
| rs293746 | 0.86[EUR][1000 genomes] |
| rs294695 | 0.83[EUR][1000 genomes] |
| rs34701667 | 0.87[EUR][1000 genomes] |
| rs34920909 | 0.95[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35135658 | 0.87[EUR][1000 genomes] |
| rs35263618 | 0.87[EUR][1000 genomes] |
| rs35899185 | 0.85[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs58952013 | 0.87[EUR][1000 genomes] |
| rs59889951 | 0.95[AFR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492319 | chr5:36570707-37061019 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv527961 | chr5:36781051-36828730 | Enhancers Weak transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv525478 | chr5:36804225-37349895 | Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:36825800-36826400 | Enhancers | Fetal Heart | heart |
