Variant report

Variant	rs158792
Chromosome Location	chr5:36889170-36889171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36887613..36889354-chr5:36924858..36926395,2	MCF-7	breast:
2	chr5:36888811..36890696-chr5:36892108..36894974,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12656269	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12659960	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12659981	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12659983	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13183090	0.87[ASN][1000 genomes]
rs151945	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151946	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151947	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158410	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158411	0.94[ASN][1000 genomes]
rs158412	0.94[ASN][1000 genomes]
rs158793	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158794	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158797	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158798	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158799	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158802	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs159140	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159141	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs167146	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16903459	0.87[ASN][1000 genomes]
rs16903490	0.81[EUR][1000 genomes]
rs181755	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2133786	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs245587	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs245588	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs292160	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs292179	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs292180	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs292181	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292186	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292196	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293746	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs293748	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs293774	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs294695	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34701667	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34920909	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35011787	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35135658	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35263618	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35701604	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35899185	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs468022	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56261529	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58952013	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59889951	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66868318	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36879200-36889400	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:36879600-36889400	Weak transcription	HSMMtube	muscle
3	chr5:36879800-36891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:36880000-36891200	Weak transcription	Fetal Brain Female	brain
5	chr5:36880000-36897400	Weak transcription	NHLF	lung
6	chr5:36880400-36897800	Weak transcription	HUVEC	blood vessel
7	chr5:36881000-36899800	Weak transcription	Brain Substantia Nigra	brain
8	chr5:36881000-36900600	Weak transcription	Osteobl	bone
9	chr5:36881200-36890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:36881200-36892400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:36881200-36900400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:36881400-36897400	Weak transcription	NHDF-Ad	bronchial
13	chr5:36881800-36895400	Weak transcription	Fetal Kidney	kidney
14	chr5:36882400-36899800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:36882800-36891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:36884000-36892000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:36884200-36889600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr5:36884600-36897200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:36885000-36899200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:36885800-36890800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr5:36885800-36890800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:36886000-36894800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr5:36886200-36889600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr5:36886200-36889800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:36886200-36891400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:36886200-36891400	Weak transcription	Aorta	Aorta
27	chr5:36886200-36891400	Weak transcription	HSMM	muscle
28	chr5:36886200-36893200	Weak transcription	Placenta	Placenta
29	chr5:36886200-36893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr5:36886200-36893400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr5:36886200-36893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:36886200-36894800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr5:36886200-36895000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:36886200-36897600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:36886200-36899000	Weak transcription	Fetal Thymus	thymus
36	chr5:36886400-36889400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr5:36886400-36889600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr5:36886400-36889600	Enhancers	Primary T cells from cord blood	blood
39	chr5:36886400-36890800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:36886400-36890800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:36886400-36890800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr5:36886400-36893000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:36886400-36893400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:36886400-36893600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr5:36886400-36893600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr5:36886400-36894800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:36886400-36896600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:36886400-36897600	Weak transcription	A549	lung
49	chr5:36886400-36898200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr5:36886400-36900400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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