Variant report

Variant	rs56261529
Chromosome Location	chr5:37018816-37018817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37014427..37017404-chr5:37017872..37020445,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13177875	0.81[ASN][1000 genomes]
rs13183090	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs151945	0.87[ASN][1000 genomes]
rs151946	0.91[ASN][1000 genomes]
rs151947	0.86[ASN][1000 genomes]
rs158410	0.87[ASN][1000 genomes]
rs158411	0.87[ASN][1000 genomes]
rs158412	0.87[ASN][1000 genomes]
rs158792	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs158793	0.91[ASN][1000 genomes]
rs158794	0.91[ASN][1000 genomes]
rs158797	0.90[ASN][1000 genomes]
rs158798	0.90[ASN][1000 genomes]
rs158799	0.90[ASN][1000 genomes]
rs158802	0.94[ASN][1000 genomes]
rs159140	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs159141	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs167146	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16903459	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16903490	0.86[ASN][1000 genomes]
rs181755	0.87[ASN][1000 genomes]
rs245587	0.87[ASN][1000 genomes]
rs245588	0.96[ASN][1000 genomes]
rs292160	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs292179	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs292180	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs292181	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs292186	0.99[ASN][1000 genomes]
rs292196	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs293746	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs293748	0.91[ASN][1000 genomes]
rs293774	0.96[ASN][1000 genomes]
rs294695	0.98[ASN][1000 genomes]
rs34066351	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34479946	0.87[ASN][1000 genomes]
rs34701667	0.83[ASN][1000 genomes]
rs35011787	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35701604	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs468022	0.99[ASN][1000 genomes]
rs61748200	0.88[ASN][1000 genomes]
rs6861906	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv1030883	chr5:36932448-37039857	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	esv1803659	chr5:36935129-37039857	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1033928	chr5:36947293-37039857	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv881592	chr5:36954812-37027258	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv881136	chr5:36976160-37029885	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
16	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv880502	chr5:37002638-37023898	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1803948	chr5:37016522-37047066	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36949600-37086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:36954400-37026400	Weak transcription	Pancreas	Pancrea
3	chr5:36954800-37023600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:36962400-37028400	Weak transcription	Spleen	Spleen
5	chr5:36968800-37031200	Weak transcription	Aorta	Aorta
6	chr5:36969800-37065000	Weak transcription	Stomach Mucosa	stomach
7	chr5:36972600-37019200	Weak transcription	Brain Angular Gyrus	brain
8	chr5:36976600-37019200	Weak transcription	NHLF	lung
9	chr5:36976600-37022800	Weak transcription	Fetal Brain Male	brain
10	chr5:36979800-37057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:36991000-37064600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:36996800-37022400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:36997000-37020600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:36997600-37064600	Weak transcription	Esophagus	oesophagus
15	chr5:37000800-37026400	Weak transcription	Ovary	ovary
16	chr5:37001200-37066200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:37001400-37022000	Weak transcription	Fetal Heart	heart
18	chr5:37002000-37026400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:37002600-37026400	Weak transcription	Small Intestine	intestine
20	chr5:37005200-37026400	Weak transcription	Right Ventricle	heart
21	chr5:37005200-37041800	Weak transcription	Lung	lung
22	chr5:37009200-37049200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:37010200-37043600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:37010800-37019000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:37010800-37064600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:37011000-37054400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:37011600-37020200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:37011600-37020600	Weak transcription	Brain Anterior Caudate	brain
29	chr5:37011800-37019000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:37011800-37020600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:37012400-37064600	Weak transcription	Gastric	stomach
32	chr5:37014000-37033000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr5:37014200-37025200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:37014200-37025600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:37014200-37030400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr5:37014200-37032600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:37014200-37032800	Strong transcription	Placenta	Placenta
38	chr5:37014200-37033000	Strong transcription	Liver	Liver
39	chr5:37014200-37033000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr5:37014200-37034600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:37014200-37034800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr5:37014200-37035400	Strong transcription	Dnd41	blood
43	chr5:37014200-37036000	Strong transcription	Adipose Nuclei	Adipose
44	chr5:37014200-37066200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr5:37014200-37067200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr5:37014400-37019800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:37014400-37032000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:37014400-37032400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:37014600-37024800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:37014600-37029800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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