Variant report

Variant	rs158793
Chromosome Location	chr5:36885090-36885091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12656269	0.86[ASN][1000 genomes]
rs12659960	0.86[ASN][1000 genomes]
rs12659981	0.86[ASN][1000 genomes]
rs12659983	0.86[ASN][1000 genomes]
rs13183090	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs151945	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs151946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151947	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158410	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs158411	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs158412	0.95[ASN][1000 genomes]
rs158792	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158794	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158797	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158798	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158799	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158802	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159140	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs159141	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs167146	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16903459	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs181755	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2133786	0.88[ASN][1000 genomes]
rs245587	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs245588	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs292160	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292179	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs292180	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs292181	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs292186	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs292196	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs293746	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293748	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293774	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs294695	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34066351	0.81[ASN][1000 genomes]
rs34479946	0.81[ASN][1000 genomes]
rs34701667	0.91[ASN][1000 genomes]
rs34920909	0.88[ASN][1000 genomes]
rs35011787	0.91[ASN][1000 genomes]
rs35135658	0.85[ASN][1000 genomes]
rs35263618	0.88[ASN][1000 genomes]
rs35701604	0.91[ASN][1000 genomes]
rs35899185	0.88[ASN][1000 genomes]
rs468022	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56261529	0.91[ASN][1000 genomes]
rs58952013	0.85[ASN][1000 genomes]
rs59889951	0.88[ASN][1000 genomes]
rs61748200	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36877800-36885400	Weak transcription	Spleen	Spleen
2	chr5:36878800-36885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36879000-36885600	Weak transcription	Placenta	Placenta
4	chr5:36879200-36885200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:36879200-36885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:36879200-36885200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:36879200-36885200	Weak transcription	Gastric	stomach
8	chr5:36879200-36885200	Weak transcription	Pancreas	Pancrea
9	chr5:36879200-36885400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:36879200-36885400	Weak transcription	Esophagus	oesophagus
11	chr5:36879200-36885400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:36879200-36885400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:36879200-36885600	Weak transcription	Colonic Mucosa	Colon
14	chr5:36879200-36885800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:36879200-36885800	Weak transcription	Small Intestine	intestine
16	chr5:36879200-36889400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:36879400-36885200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:36879400-36885200	Weak transcription	Fetal Thymus	thymus
19	chr5:36879400-36885400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:36879400-36885400	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:36879400-36885400	Weak transcription	Fetal Stomach	stomach
22	chr5:36879400-36885400	Weak transcription	Right Ventricle	heart
23	chr5:36879400-36885600	Weak transcription	HSMM	muscle
24	chr5:36879400-36885800	Weak transcription	Psoas Muscle	Psoas
25	chr5:36879400-36887400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:36879600-36889400	Weak transcription	HSMMtube	muscle
27	chr5:36879800-36885200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:36879800-36885400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr5:36879800-36885400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:36879800-36885400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:36879800-36885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:36879800-36885400	Weak transcription	Thymus	Thymus
33	chr5:36879800-36891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr5:36880000-36885200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr5:36880000-36889000	Weak transcription	Brain Anterior Caudate	brain
36	chr5:36880000-36891200	Weak transcription	Fetal Brain Female	brain
37	chr5:36880000-36897400	Weak transcription	NHLF	lung
38	chr5:36880200-36885600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:36880400-36897800	Weak transcription	HUVEC	blood vessel
40	chr5:36881000-36899800	Weak transcription	Brain Substantia Nigra	brain
41	chr5:36881000-36900600	Weak transcription	Osteobl	bone
42	chr5:36881200-36885200	Weak transcription	Ovary	ovary
43	chr5:36881200-36885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:36881200-36885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:36881200-36885400	Weak transcription	Brain Angular Gyrus	brain
46	chr5:36881200-36885600	Weak transcription	Fetal Lung	lung
47	chr5:36881200-36885600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr5:36881200-36887400	Weak transcription	HMEC	breast
49	chr5:36881200-36890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:36881200-36892400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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