Variant report

Variant	rs12659960
Chromosome Location	chr5:36788015-36788016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12656269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151945	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs151946	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs151947	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs158410	0.93[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158411	1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs158412	0.90[ASN][1000 genomes]
rs158792	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158793	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs158794	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs158797	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158798	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158799	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs159140	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs159141	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs167146	0.80[EUR][1000 genomes]
rs181755	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2133786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245587	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs245588	0.81[ASN][1000 genomes]
rs292160	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.86[ASN][1000 genomes]
rs292179	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs292180	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs292181	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs292196	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs293746	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs293748	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs293774	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs294695	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs34701667	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34920909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35135658	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35263618	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35899185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58952013	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59889951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66868318	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv527961	chr5:36781051-36828730	Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36786000-36789600	Enhancers	Stomach Mucosa	stomach
2	chr5:36786000-36790000	Enhancers	Fetal Intestine Small	intestine
3	chr5:36786600-36789800	Enhancers	Liver	Liver
4	chr5:36786600-36789800	Enhancers	HepG2	liver
5	chr5:36787800-36788600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:36788000-36788400	Weak transcription	Duodenum Mucosa	Duodenum

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