Variant report

Variant	rs35011787
Chromosome Location	chr5:37010404-37010405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36994814..36997179-chr5:37008885..37010934,2	K562	blood:
2	chr5:37009245..37010939-chr5:37023761..37025926,2	K562	blood:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13177875	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13183090	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151945	0.87[ASN][1000 genomes]
rs151946	0.91[ASN][1000 genomes]
rs151947	0.86[ASN][1000 genomes]
rs158410	0.87[ASN][1000 genomes]
rs158411	0.87[ASN][1000 genomes]
rs158412	0.87[ASN][1000 genomes]
rs158792	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158793	0.91[ASN][1000 genomes]
rs158794	0.91[ASN][1000 genomes]
rs158797	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158798	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158799	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158802	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159140	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159141	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs167146	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16903459	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16903490	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs181755	0.87[ASN][1000 genomes]
rs245587	0.87[ASN][1000 genomes]
rs245588	0.96[ASN][1000 genomes]
rs292160	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs292179	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs292180	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs292181	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs292186	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292196	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs293746	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293748	0.91[ASN][1000 genomes]
rs293774	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294695	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34066351	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34479946	0.87[ASN][1000 genomes]
rs34525350	0.81[EUR][1000 genomes]
rs34701667	0.83[ASN][1000 genomes]
rs35701604	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs468022	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56261529	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61748200	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6861906	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv1023362	chr5:36927652-37010749	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv1017947	chr5:36927652-37017180	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1029319	chr5:36928654-37017180	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv1030883	chr5:36932448-37039857	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	esv1803659	chr5:36935129-37039857	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	nsv1033928	chr5:36947293-37039857	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
15	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv881592	chr5:36954812-37027258	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
17	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv881136	chr5:36976160-37029885	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
19	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
20	nsv880502	chr5:37002638-37023898	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36949600-37086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:36954400-37026400	Weak transcription	Pancreas	Pancrea
3	chr5:36954800-37023600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:36962400-37028400	Weak transcription	Spleen	Spleen
5	chr5:36965800-37018600	Weak transcription	Psoas Muscle	Psoas
6	chr5:36968800-37031200	Weak transcription	Aorta	Aorta
7	chr5:36969800-37065000	Weak transcription	Stomach Mucosa	stomach
8	chr5:36972600-37019200	Weak transcription	Brain Angular Gyrus	brain
9	chr5:36976400-37010600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:36976600-37019200	Weak transcription	NHLF	lung
11	chr5:36976600-37022800	Weak transcription	Fetal Brain Male	brain
12	chr5:36979800-37057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:36986200-37015400	Weak transcription	Colonic Mucosa	Colon
14	chr5:36986200-37015600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:36991000-37012400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr5:36991000-37064600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:36992200-37013000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:36993000-37011800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:36993200-37011800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:36994000-37011800	Strong transcription	Dnd41	blood
21	chr5:36994600-37011600	Strong transcription	Placenta	Placenta
22	chr5:36994600-37013200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:36995000-37011600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:36995000-37011600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr5:36995000-37011800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:36995000-37011800	Strong transcription	Adipose Nuclei	Adipose
27	chr5:36995000-37011800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr5:36995000-37012400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:36995200-37011800	Strong transcription	HSMM	muscle
30	chr5:36995800-37011000	Strong transcription	GM12878-XiMat	blood
31	chr5:36995800-37011600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:36995800-37011600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr5:36995800-37011600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:36995800-37013200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:36996200-37011600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr5:36996200-37011800	Strong transcription	Fetal Thymus	thymus
37	chr5:36996800-37022400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr5:36997000-37011400	Weak transcription	Gastric	stomach
39	chr5:36997000-37020600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:36997600-37018200	Weak transcription	Left Ventricle	heart
41	chr5:36997600-37064600	Weak transcription	Esophagus	oesophagus
42	chr5:36999000-37011800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:36999000-37011800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr5:36999800-37011600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:37000000-37011600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:37000200-37011800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:37000400-37015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:37000800-37015200	Weak transcription	Fetal Muscle Leg	muscle
49	chr5:37000800-37026400	Weak transcription	Ovary	ovary
50	chr5:37001200-37014800	Weak transcription	Brain Substantia Nigra	brain

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