Variant report

Variant	rs6687169
Chromosome Location	chr1:155902386-155902387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155901303..155903667-chr1:156040998..156043526,2	K562	blood:
2	chr1:155902248..155903892-chr1:155972223..155974691,2	K562	blood:
3	chr1:155874080..155876407-chr1:155902022..155904119,2	MCF-7	breast:
4	chr1:155902135..155904272-chr1:155989311..155991298,2	MCF-7	breast:
5	chr1:155901793..155904687-chr1:155910352..155912592,3	MCF-7	breast:
6	chr1:155898876..155902845-chr1:155952494..155955112,4	K562	blood:
7	chr1:155878384..155883302-chr1:155900472..155905868,7	K562	blood:
8	chr1:155902066..155906841-chr1:156030418..156033688,4	MCF-7	breast:
9	chr1:155901551..155903303-chr1:155953357..155955965,2	K562	blood:
10	chr1:155900582..155906000-chr1:156022334..156026632,8	MCF-7	breast:
11	chr1:155902334..155905932-chr1:156022257..156026290,7	K562	blood:
12	chr1:155879409..155881796-chr1:155901375..155905401,4	MCF-7	breast:
13	chr1:155902096..155906333-chr1:155944635..155950706,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173080	Chromatin interaction
ENSG00000143622	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000273002	Chromatin interaction
ENSG00000160803	Chromatin interaction
ENSG00000163479	Chromatin interaction
ENSG00000132698	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11264415	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11264418	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12066633	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12080245	1.00[MEX][hapmap]
rs12095373	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1804478	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2152050	0.93[AFR][1000 genomes]
rs2152051	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41409345	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs550092	0.83[AFR][1000 genomes]
rs605025	1.00[ASW][hapmap]
rs605472	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6427292	0.81[AFR][1000 genomes]
rs6674865	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6692929	1.00[MEX][hapmap]
rs6693485	0.89[AMR][1000 genomes]
rs7546314	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs822516	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155882200-155903000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:155882800-155902600	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr1:155888000-155902600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:155896600-155903200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155896800-155903200	Weak transcription	Gastric	stomach
6	chr1:155897400-155903400	Weak transcription	Aorta	Aorta
7	chr1:155897800-155904000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:155898600-155903000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:155899000-155903000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:155899200-155902800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:155899400-155902800	Genic enhancers	Fetal Intestine Large	intestine
12	chr1:155899400-155903200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:155899400-155903600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:155899800-155903000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
15	chr1:155899800-155903200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:155899800-155903200	Genic enhancers	Primary T cells fromperipheralblood	blood
17	chr1:155900000-155902800	Genic enhancers	Primary T cells from cord blood	blood
18	chr1:155900000-155903000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr1:155900000-155903000	Genic enhancers	Liver	Liver
20	chr1:155900000-155903200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:155900000-155903200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr1:155900000-155903400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:155900000-155903600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:155900000-155903600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
25	chr1:155900200-155902600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:155900200-155902800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr1:155900200-155902800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:155900200-155903000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:155900200-155903000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:155900200-155903000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:155900200-155903000	Genic enhancers	Brain Anterior Caudate	brain
32	chr1:155900200-155903200	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr1:155900200-155903400	Genic enhancers	Fetal Lung	lung
34	chr1:155900200-155903400	Transcr. at gene 5' and 3'	HMEC	breast
35	chr1:155900200-155903600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:155900200-155903600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:155900400-155903000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
38	chr1:155900400-155903000	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
39	chr1:155900400-155903400	Enhancers	Fetal Heart	heart
40	chr1:155900600-155902400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:155900600-155902800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
42	chr1:155900600-155903000	Genic enhancers	Fetal Thymus	thymus
43	chr1:155900600-155903200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:155900600-155903200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:155900600-155903200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
46	chr1:155900600-155903200	Genic enhancers	Fetal Muscle Trunk	muscle
47	chr1:155900600-155903200	Genic enhancers	Fetal Muscle Leg	muscle
48	chr1:155900600-155903200	Genic enhancers	Placenta	Placenta
49	chr1:155900600-155903200	Genic enhancers	Fetal Stomach	stomach
50	chr1:155900600-155903800	Transcr. at gene 5' and 3'	NHLF	lung

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