Variant report

Variant	rs6687644
Chromosome Location	chr1:90685501-90685502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17130996	0.94[ASN][1000 genomes]
rs60740905	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72646156	0.98[ASN][1000 genomes]
rs72646159	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90684800-90685600	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr1:90684800-90686000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:90685000-90685600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:90685000-90685600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr1:90685000-90685600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:90685000-90685600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:90685000-90685600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:90685000-90685600	Active TSS	Fetal Intestine Small	intestine
9	chr1:90685000-90685800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr1:90685000-90685800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:90685000-90686000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr1:90685000-90686000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr1:90685000-90686000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr1:90685000-90686000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:90685000-90686000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr1:90685000-90686400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:90685200-90685600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr1:90685200-90685800	Active TSS	Duodenum Mucosa	Duodenum
19	chr1:90685400-90685600	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr1:90685400-90685600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr1:90685400-90686200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr1:90685400-90686600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr1:90685400-90690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:90685400-90691000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:90685400-90691000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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