The 2.0 version of rSNPBase

Variant report

Variant rs6688230
Chromosome Location chr1:93641124-93641125
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93580200-93643600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:93582400-93642800 Weak transcription Gastric stomach
3 chr1:93585800-93642200 Weak transcription Esophagus oesophagus
4 chr1:93601000-93643600 Weak transcription HSMMtube muscle
5 chr1:93606000-93644600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:93611800-93644600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:93615600-93643200 Weak transcription Fetal Kidney kidney
8 chr1:93621400-93643000 Weak transcription HMEC breast
9 chr1:93621400-93643800 Weak transcription Colonic Mucosa Colon
10 chr1:93621600-93641400 Weak transcription NHEK skin
11 chr1:93624000-93643400 Weak transcription NH-A brain
12 chr1:93624000-93643600 Weak transcription H1 Cell Line embryonic stem cell
13 chr1:93624400-93643600 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr1:93624800-93641600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:93624800-93643600 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr1:93624800-93643600 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:93625000-93641200 Weak transcription HSMM muscle
18 chr1:93625800-93641600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:93625800-93643400 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:93626000-93641200 Weak transcription NHDF-Ad bronchial
21 chr1:93630400-93641600 Weak transcription Right Atrium heart
22 chr1:93630800-93642000 Weak transcription Left Ventricle heart
23 chr1:93633400-93643600 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:93634200-93642000 Weak transcription Brain Anterior Caudate brain
25 chr1:93634600-93643000 Weak transcription Right Ventricle heart
26 chr1:93636200-93642200 Weak transcription Lung lung
27 chr1:93636200-93642800 Weak transcription Fetal Brain Female brain
28 chr1:93636200-93642800 Weak transcription Pancreas Pancrea
29 chr1:93636200-93643200 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:93636200-93643400 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:93636200-93644000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:93636200-93644800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:93636400-93642000 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:93636400-93643800 Weak transcription Fetal Stomach stomach
35 chr1:93636600-93641600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:93636600-93641600 Weak transcription Spleen Spleen
37 chr1:93636600-93642000 Weak transcription Fetal Intestine Small intestine
38 chr1:93636600-93642200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:93636600-93642800 Weak transcription Fetal Muscle Leg muscle
40 chr1:93637400-93641400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:93637400-93641400 Weak transcription Colon Smooth Muscle Colon
42 chr1:93637400-93642800 Weak transcription Stomach Smooth Muscle stomach
43 chr1:93637600-93643600 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr1:93638000-93641200 Weak transcription Hela-S3 cervix
45 chr1:93638000-93643000 Weak transcription NHLF lung
46 chr1:93638200-93642200 Weak transcription Primary monocytes fromperipheralblood blood
47 chr1:93638200-93642800 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr1:93638200-93642800 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr1:93638200-93643600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:93638200-93644000 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015