Variant report

Variant	rs6693831
Chromosome Location	chr1:67720867-67720868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10889675	0.83[CHB][hapmap];0.91[CHD][hapmap];0.91[ASN][1000 genomes]
rs10889676	0.89[CHD][hapmap]
rs10889677	0.89[CHD][hapmap]
rs11209028	0.85[YRI][hapmap]
rs11581483	0.89[ASN][1000 genomes]
rs11586253	0.81[ASN][1000 genomes]
rs12030948	0.86[CHD][hapmap]
rs12041187	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2201841	0.86[CHD][hapmap]
rs4655531	0.91[ASN][1000 genomes]
rs56669261	0.89[ASN][1000 genomes]
rs56996373	0.81[ASN][1000 genomes]
rs59033475	0.88[ASN][1000 genomes]
rs6588251	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72929019	0.89[ASN][1000 genomes]
rs7527919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7542081	0.96[ASN][1000 genomes]
rs790636	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1243	chr1:67700289-67745337	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67703800-67722000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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