Variant report

Variant	rs56996373
Chromosome Location	chr1:67692810-67692811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10889675	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11581483	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11586237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11586253	1.00[ASN][1000 genomes]
rs12041187	0.82[ASN][1000 genomes]
rs12406837	0.98[ASN][1000 genomes]
rs4655531	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56669261	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59033475	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6588251	0.82[ASN][1000 genomes]
rs6693831	0.81[ASN][1000 genomes]
rs72929019	0.92[ASN][1000 genomes]
rs7527919	0.82[ASN][1000 genomes]
rs7542081	0.83[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67691000-67693200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:67692400-67693400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:67692600-67693200	Enhancers	HMEC	breast
4	chr1:67692600-67693400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:67692600-67693600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:67692600-67693600	Enhancers	NHEK	skin
7	chr1:67692600-67695000	Weak transcription	Esophagus	oesophagus
8	chr1:67692800-67702000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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