Variant report

Variant	rs6694465
Chromosome Location	chr1:167009951-167009952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:167009577..167010118-chr1:167021584..167022369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227907	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10918608	0.87[AFR][1000 genomes]
rs11802666	0.85[AFR][1000 genomes]
rs11805946	0.82[AFR][1000 genomes]
rs12126991	0.92[CEU][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12131832	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12133327	0.96[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12145919	0.82[EUR][1000 genomes]
rs1410247	0.80[ASN][1000 genomes]
rs2025893	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2225153	0.98[ASN][1000 genomes]
rs2312487	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3736988	0.96[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs393025	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs4657621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56093705	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61447801	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6427051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6655947	0.92[CEU][hapmap];0.97[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6661553	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6667210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673720	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs6681562	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6681571	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6693185	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6696203	0.81[CEU][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6698931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004148	chr1:166951869-167016311	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2750815	chr1:166953866-167180342	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv528049	chr1:167003539-167010083	Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv519114	chr1:167003539-167015184	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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