Variant report

Variant	rs6696203
Chromosome Location	chr1:166978748-166978749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166970676..166973500-chr1:166976279..166979134,2	K562	blood:
2	chr1:166954507..166957391-chr1:166978145..166980426,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1041238	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs10918607	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10918608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11578336	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11802666	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11805946	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12118335	0.96[ASN][1000 genomes]
rs12126991	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12131832	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133327	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12134016	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12145919	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12564877	0.97[ASN][1000 genomes]
rs12569084	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2296837	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2312487	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2312675	0.80[CHB][hapmap]
rs3736988	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41269702	0.85[ASN][1000 genomes]
rs4657621	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56093705	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61447801	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61606407	0.85[ASN][1000 genomes]
rs6427053	1.00[CHB][hapmap];0.80[JPT][hapmap];0.94[ASN][1000 genomes]
rs6655947	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6660048	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs6661553	0.88[CEU][hapmap];0.97[YRI][hapmap]
rs6662130	0.95[ASN][1000 genomes]
rs6665341	0.85[ASN][1000 genomes]
rs6667210	0.87[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6669886	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6673622	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673720	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6681562	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681571	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6682062	0.85[ASN][1000 genomes]
rs6694465	0.81[CEU][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6695162	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs6695609	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs6697417	0.86[ASN][1000 genomes]
rs6698931	0.85[YRI][hapmap]
rs6699159	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7511933	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518155	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7528849	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7533688	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7545911	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7550698	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004148	chr1:166951869-167016311	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2750815	chr1:166953866-167180342	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166978600-166980200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links